Internet Sites for Eukaryotic Molecular Genetics 4132

Topics: [Search Tools] [Sequence Comparison and Manipulation] [Genome Databases] [Medline Literature Searching]

Unknown Sequence:

Search Tools for DNA and Protein Databases:

Entrez Browser (NCBI): http://www.ncbi.nlm.nih.gov/Genbank/GenbankSearch.html
Compare a sequence (Protein or DNA) to the database.

Sequence Comparison and Manipulation:

Translate: http://www.expasy.ch/tools/dna.html

Translate a nucleotide sequence into protein at ExPASy, Switzerland.

Translate (The Protein Machine): http://www.ebi.ac.uk/contrib/tommaso/translate.html

Translate a nucleotide sequence into protein at EBI, United Kingdom

Tm determination (at the University of Minnesota) http://alces.med.umn.edu/rawtm.html
Part of: "The Virtual Genome Center: (University of Minnesota) http://alces.med.umn.edu/VGC.html

BLAST Sequence Similarity Searching at NCBI: http://www.ncbi.nlm.nih.gov/blast/blast.cgi

Search nucleic acid and protein databases.

BLAST at GenomeNet, Japan: http://www.blast.genome.ad.jp/SIT/BLAST.html

Compare a sequence (Protein or DNA) to the database.

ClustlW: http://dot.imgen.bcm.tmc.edu:9331/multi-align/multi-align.html

Alignment of multiple sequences.

Gene Finder: http://dot.imgen.bcm.tmc.edu:9331/gene-finder/gf.html

Predict Gene Structure, Internal Exons and Splicing Sites in DNA and Exon-Exon Junctions in cDNA at Baylor College of Medicine.

Pedro's BioMolecular Research Tools: http://www.public.iastate.edu/~pedro/research_tools.html

Many, many molecular biology computer resources!

The National Center for Biological Information (NCBI) http://www.ncbi.nlm.nih.gov/

Lots of interesting links!

Genome Databases:

Arabidopsis thaliana Database (AtDB): http://genome-www.stanford.edu/Arabidopsis/
Database for information on the genetics of the plant Arabidopsis thaliana.

FlyBase: http://flybase.bio.indiana.edu:82/

FlyBase is the comprehensive database for information on the genetics and biology of Drosophila.

NCBI Human Genome Resources: http://www.ncbi.nlm.nih.gov/genome/guide/

Human Genome Information from the Nat'l Center for Biological Information.

Stanford Human Genome Center: http://www_shgc.stanford.edu/

Human Genome Information from the Stanford Human Genome Center.

Human Genome Database: http://gdbwww.gdb.org/

The Human Genome Database, in searchable form.

Online Mendelian Inheritance in Man (NCBI) http://www3.ncbi.nlm.nih.gov/omim/

Information on human genetics and genetic diseases.

A Gene Map of the Human Genome (from Science, 1996) http://www.ncbi.nlm.nih.gov/SCIENCE96/

An annotated map of the human genome (many links).
Original article: Science 274(5287) (25 October 1996): 540-546

Mouse Genome Database: http://www.informatics.jax.org/

Mouse genome information at Jackson Laboratory, Maine.

Saccharomyces Genome Database: http://genome-www.stanford.edu/Saccharomyces/

Yeast genome database (Genetics and Molecular Biology).

Maize Genome Database: http://www.agron.missouri.edu/

Maize (corn) genome database

Other Plant Genomes: http://probe.nalusda.gov:8300/plant/index.html

Plant genome information at the USDA.

Medline Literature Search:

Entrez PubMed Medline Query http://www.ncbi.nlm.nih.gov/Entrez/medline.html
Help Using the WWW Entrez Medline Search -- User Guide to the WWW Search options

HealthGate
Some of the files offered through this service are subscriber based; however, MEDLINE searching for the last two year is free.

Other Interesting Links

The Biology Project: http://www.biology.arizona.edu/default.html
The Biology Project is an interactive online resource for learning biology, developed at The University of Arizona. "Students will find that the information covered in The Biology Project is probably just what they've been studying in their introductory biology course, and advanced students will find these materials to be a useful review. All students will benefit from the real-life applications of biology and the inclusion of up-to-date research findings, as well as career options in biology. " Source: The Biology Project

All The Virology On The WWW: http://www.tulane.edu/~dmsander/garryfavweb.html

"All the Virology on the WWW seeks to be the best single site for Virology information on the Internet. We have collected all the virology related Web sites that might be of interest to our fellow virologists, and others interested in learning more about viruses."
Source: All The Virology On The WWW

Copyright © 1996-1998
Professor John C. Larkin
Louisiana State University, Department of Plant Biology
Baton Rouge, Louisiana 70803-3100

URL: http://www.lib.lsu.edu/sci/chem/courses/pbio4123/genetics.html
This document was last updated: Tuesday, 07-Sept-99
Suggestions/Comments: Mitchell Brown

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