Genetic Tools

  1.    Primer A Primer Design Tool at the U. Minnesota

  2.    Primer 3 Primer design. WWW Front End at MIT.

  3.    Tm - Oligonucleotide Melting Point Determination at U. Minnesota

  4.    Poland - Calculate the Thermal Denaturation Profile of Double Stranded RNA or DNA at Uni-Düsseldorf, Germany

  5.    Restriction Enzyme Analysis. WebGene at SUNY Geneseo Biology, NY

  6.    Dot Plot - Compare a DNA Sequence with Itself at U. Minnesota

  7.    MSA - Multiple Sequence Alignment at Washington U.

  8.    Mul tiple Sequence Alignments - CLUSTAL-W, MAP, and PIMA alignments at Baylor College of Medicine

  9.    CLUSTALW - Multiply Sequence Alignments at IBC-Washington U.

  10.    FASTA - Compare a Nucleic Acid Sequence to Nucleotide Sequence Databases at EBI, UK

  11.    FASTA (Berlin, Vectorbank, etc) at Stanford U.

  12.    FASTA at EERIE-Nimes, France

  13.    FASTA at CRIHAN, France

  14.    TFASTA - Match a Protein Sequence Against All Six Frames of GenBank Sequences at EERIE-Nimes, France

  15.    MOTIF - Searching protein sequence motifs

  16.    PMOTIF - Search Protein Motifs in Gene Sequence at U. Minnesota

  17.    ORF and protein analysis Identify open reading frames (ORF) in DNA sequence and translate them into proteins. WebGene at the Dept. of Biology, SUNY Geneseo

  18.    Codon Usage - Analysis of Different ORFs in a Gene Sequence at U. Minnesota

  19.    Sequence Translation - Translate Gene Sequences at U. Minnesota

  20.    Translate - Translate a Nucleotide Sequence to a Protein at ExPASy, Switzerland

  21.    Gene Finder - Predict Gene Structure, Internal Exons and Splicing Sites in DNA and Exon-Exon Junction in cDNA at Baylor College of Medicine

  22.    GenLang - Find Genes and Other Higher-Order Features in Nucleotide Sequences at CBIL - U. Pennsylvania

  23.    Grail - Analysis of the Protein Coding Potential of a DNA Sequence at ORNL

  24.    PSORT - Prediction of protein Sorting Signals

  25.    PatScan - Look for Pattern Matches in DNA or Protein Sequences at Argonne National Laboratory

  26.    ProfileScan - Search a Sequence Against a Library of Profiles at ISREC, Switzerland

  27.    SSEARCH - Universal Sequence Comparison Using the Smith-Waterman Algorithm at EERIE-Nimes, France

  28.    BioSCAN - Biological Sequence Comparative Analysis at U. North Caroline

  29.    PHILIP-Bootstrapping Analysis - Divergence Between Protein or Nucleotide Sequences at Institut Pasteur, France

  30.    EMP Metabolic Pathways - Navigation in Metabolic Pathways from MCS-Computational Biology at Argonne National Laboratory

  31.    SRSWWW - Network Browser for Databanks in Molecular Biology at EMBL-Heidelberg

  32.    Cloning Vector Databases:
    1. VecBase - Cloning Vector Sequence Database.at CAOS/CAMM, The Netherlands
    2. Vector-DB at Queen's U. - Kensington, Canada
    3. VECTOR at BEN, Belgium
    4. Vector at Johns Hopkins (gopher)
    5. Vector -ig at IVR, Kyoto-U. (gopher)

  33.    Restriction Enzyme Databases ( ReBase ):
    1. ReBase and ReBase-Search at New England Biolabs
    2. ReBase at EMBL-Heidelberg
    3. ReBase at Johns Hopkins

  34.    RSVP - Rapid Sequence Visualization in Postscript for Analysis of DNA Sequences at CBIL-U. Pennsylvania

  35.    BOXSHADE - Pretty Printing and Shading of Multiple-Sequence Alignments at ISREC, Switzerland

  36.    Pedro's BioMolecular Research Tools A Collection of WWW Links to information and Services Useful to Molecular Biologists.



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